How ViBrism-DB useful


Watch an YouTube video about TT methods

posted Sep 15, 2014, 12:14 AM by BReNt Admin   [ updated Sep 15, 2014, 12:17 AM ]

MAPPING GENES onto BRAIN STRUCTURES       

Published on Apr 13, 2014

Here we introduce a new technique for three-dimensional mapping of gene expression patterns onto brain structures. The technique, called Transcriptome Tomography (TT), ...


Video D: 3D anatomical image of the mouse head produced with 3D-ISM

posted May 28, 2013, 6:13 AM by BReNt Site-Editor   [ updated May 28, 2013, 8:16 PM by BReNt Admin ]

C57BL/6J 8 week male mouse brain


Video C: Mapping anatomical areas virtually in the ViBrism space

posted Jul 18, 2012, 8:56 AM by BReNt Site-Editor   [ updated Jul 23, 2012, 6:33 PM ]


This movie shows how brain areas represented by 500-micron diameter spheres (BrainStars analysis points) are mapped in the ViBrism space. Bilaterally 46 areas x 2 are shown.

Video B: showing expression areas and densities of multiple genes in the 3D space

posted Dec 17, 2011, 10:02 PM by BReNt Site-Editor   [ updated Jul 23, 2012, 6:33 PM ]

3D view of 7 genes in the mouse brain

<Legends>   
yellow: Neurod1, light green: Pax7, light blue: Slc6a3, dark blue: Spink8, orange: Gpr151, red: Acvr1c, magenta: Tmem40
  (cc) Morita 2011

Video A: ViBrism-DB Search by gene symbol

posted Nov 9, 2011, 5:28 PM by BReNt Admin   [ updated Jul 23, 2012, 6:34 PM by BReNt Site-Editor ]


webimage jp

Type a gene symbol as a query, and click "search", then candidates are listed. Click 2D and 3D to see the maps.

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